Program

8:45 - 9:00
Opening

9:00 - 13:30
Session 1
Sala Bracci
chairs:
Luca Mesin
James Hughes
9:00 - 10:00
Pierre Baldi
10:00 - 10:20
Preterm infants' limb-pose estimation from depth images using convolutional neural networks
Lucia Migliorelli
Sara Moccia, Lucia Migliorelli, Rocco Pietrini and Emanuele Frontoni.
10:20 - 10:40
GMM Based Detection of Schizophrenia Using Eye Tracking
Filip Csoka
Juraj Kacur, Jaroslav Polec, Filip Csoka and Eva Smolejova
10:40 - 11:00
Using Heatmaps for Deep Learning based Disease Classification
Pierangela Bruno
Pierangela Bruno and Francesco Calimeri
11:00 - 11:30
Coffee Break
11:30 - 11:50
Integrating deep and radiomics features in cancer bioimaging
Nicole Bussola
Andrea Bizzego, Nicole Bussola, Damiana Salvalai, Marco Chierici, Valerio Maggio, Giuseppe Jurman and Cesare Furlanello
11:50 - 12:10
Development of a Deep Learning Method to Predict Optimal Ablation Patterns for Atrial Fibrillation
Marica Muffoletto
Marica Muffoletto, Xiao Fu, Aditi Roy, Marta Varela, Paul Bates and Oleg Aslanidi
12:10 - 12:30
Using Node-Based Resilience Clustering to Predict and Analyze Medical Data
John Matta
Thomas Clifford, Justin Bruce and John Matta
12:30 - 12:50
Improving the prediction of cardiovascular risk with machine-learning and DNA methylation data
Silvia Benevenuta
Giovanni Cugliari, Silvia Benevenuta, Simonetta Guarrera, Carlotta Sacerdote, Rosario Tumino, Salvatore Panico, Vittorio Krogh, Paolo Vineis, Giuseppe Matullo and Piero Fariselli
12:50 - 13:10
HealthVision: An interactive web based platform for healthcare data analysis and visualisation
Eleftheria Polychronidou
Eleftheria Polychronidou, Ilias Kalamaras, Konstantinos Votis and Dimitrios Tzovaras
13:10 - 13:30
Comparative Analysis of Feature Selection Methods to Identify Biomarkers in a Stroke-Related Dataset
Thomas Clifford
Thomas Clifford, Justin Bruce, Tayo Obafemi-Ajayi and John Matta

13:30 - 15:00
Lunch Break

15:00 - 17:00
Session 2A
Sala Bracci
chair:
Eleftheria Polychronidou
15:00 - 15:20
A deep learning approach for length of stay prediction in clinical settings from medical records
Tahmina Zebin
Tahmina Zebin and Thierry Chaussalet
15:20 - 15:40
Design and implementation of a deep recurrent model for prediction of readmission in urgent care using electronic health records
Tahmina Zebin
Tahmina Zebin and Thierry Chaussalet
15:40 - 16:00
Assessment of Purposeful Movements for Post-Stroke Patients in Activites of Daliy Living with Werable Sensor Device
Abdul Haleem Butt
Abdul Haleem Butt, Carme Zambrana, Sebastian Idelsohn-Zielonka, Mireia Claramunt-Molet, Amaia Ugartemendia-Etxarri, Erika Rovini, Alessandra Moschetti, Eloy Opisso Salleras, Filippo Cavallo, Carlos Molleja and Cristina Martin
16:00 - 16:20
Multi-objective Optimization Approach to Find Biclusters in Gene Expression Data
Tayo Obafemi-Ajayi
Jeffrey Dale, Zhao Junya and Tayo Obafemi-Ajayi
16:20 - 16:40
Enhancement in Focality of Non-Invasive Brain Stimulation through High Definition (HD) Anodal Transcranial Direct Current Stimulation (tDCS) Techniques
Gauray Sharma
Gaurav Sharma and Shubhajit Roy Chowdhury
16:40 - 17:00
GameAAL - AAL solution based on Gamification and Machine Learning Techniques
Marta Pinto
Marta Pinto, Mário Pereira and Diana Raposo
Session 2B
Sala Veranda
chair:
Marco Masseroli
15:00 - 15:20
Predicting gene expression level in E. coli from mRNA sequence information
Emidio Capriotti
Linlin Zhao, Nima Abedpour, Christopher Blum, Petra Kolkhof, Mathias Beller, Markus Kollmann and Emidio Capriotti
15:20 - 15:40
A multi-trait evaluation of network propagation for GWAS results
Peter Antal
Bence Bruncsics and Peter Antal
15:40 - 16:00
A single-cell Systems Biology approach for disease-specific subpathway extraction
Aristidis Vrahatis
Aristidis Vrahatis, Georgios Dimitrakopoulos, Sotiris Tasoulis and Vassilis Plagianakos
16:00 - 16:20
Visualizing High-Dimensional Single-Cell RNA-seq Data via Random Projections and Geodesic Distances
Aristidis Vrahatis
Aristidis Vrahatis, Sotiris Tasoulis, Georgios Dimitrakopoulos and Vassilis Plagianakos
16:20 - 16:40
Analysis of Gene Variants for Functional Annotations
Hisham Al-Mubaid
16:40 - 17:00
A Predictive Model for Drug-Drug Interaction Using a Similarity Measure
Shrisha Rao
Abirami Mahadevan, Anagha Vishnuvajjala, Naman Dosi and Shrisha Rao

17:00 - 17:30
Coffee Break

17:30 - 19:30

19:30 - 20:15
Short Poster Presentations
Sala Bracci

(5 minutes each)

  • Dieter Langosch, Yao Xiao, Bo Zeng, Nicola Brenner, Dmitrij Frishman and Marc Teese
    Experimental determination and data-driven prediction of homotypic transmembrane domain interfaces
  • Luca Zanella, Pina Fusco, Maria Rosaria Esposito, Pierantonio Facco, Fabrizio Bezzo and Elisa Cimetta
    A Data-Driven Approach to Assess the Role of Neuroblastoma-Derived Exosomes in Cancer Dissemination
  • Quan Gu and Jonathan Lim
    A Bi-clustering of metabolic data and an R package for metabolic bicluster analysis
  • Antonio Pallotti, Emanuela Tagliente and Leandro Lucangeli
    A 5G monitoring system through wearable sensors and machine learning for personalized medicine
  • Regina-Veronicka Kalaydina, Alexandra Wojaczek, Mohammed Gasmallah, Hedi Zhou, Dr. Farhana Zulkernine and Dr. Myron Szewczuk
    Image Object Detection Facilitates the Study of Fucosylation in
    Multicellular Tumour Spheroids
  • Pasquale Fedele, Chiara Fedele, Fabio Giannini and Alessandra Rufa
    A platform for biofeedback signals analysis
  • Muhammad Shoaib Farooq and Fajar Arshad
    A convolutional neural network approach for predicting oncogenes using sequence statistical moments into PseAAC
  • Akil Loumani, Brahem Chaouch Wafa, Larbi Ahmed Amine, Mediani Ahmed, Bensoltane Ahmed  and Bekada Ahmed Mohamed Ali
    Rep PCR Characterization of lactic acid bacteria isolated from sheep’s milk in Algeria and assessment their potential probiotics
BBTC Meeting
Sala Veranda

20:30 - 22:30
Dinner & Poster Session

8:40 - 15:20
Session 3
Sala Bracci
chairs:
John Matta
Emidio Capriotti
8:40 - 9:40
Riccardo Bellazzi
9:40 - 10:00
Pandemic: A Graph Evolution Story
Sheridan Houghten
Michael Dubé, Sheridan Houghten and Daniel Ashlock
10:00 - 10:20
Descriptive Symbolic Models of Gaits from Parkinson's Disease Patients
James Hughes
James Hughes, Sheridan Houghten and Joseph Brown
10:20 - 10:40
Implementing Phenotypic Plasticity with an Adaptive Generative Representation
Daniel Ashlock
Daniel Ashlock, Wendy Ashlock and James Montgomery
10:40 - 11:00
FRI - Feature Relevance Intervals for Interpretable and Interactive Data Exploration
Lukas Pfannschmidt
Lukas Pfannschmidt, Christina Göpfert, Ursula Neumann, Dominik Heider and Barbara Hammer
11:00 - 11:30
11:30 - 11:50
Compression of Biological Networks using a Genetic Algorithm with Localized Merge
Joseph Alexander Brown
Sheridan Houghten, Angelo Romualdo, Tyler Collins and Joseph Alexander Brown
11:50 - 12:10
Large Block Matching Characters for Dehydrin Classification
Daniel Ashlock
Daniel Ashlock, Sierra Gillis, Amanda Saunders and Andrew Riley
12:10 - 12:30
ATLAS: a Robust Algorithm for Temporal Sequence Alignment of Treatment Lines using Claim Databases
Martin Prodel
Martin Prodel, Ludovic Lamarsalle and Vincent Augusto
12:30 - 12:50
Identification of optimal surgical intervention for Chiari I malformation
Luca Mesin
Luca Mesin, Forough Mokabberi and Christian Francesco Carlino
12:50 - 13:10
Detection and Assessment of Encephalitis from EEG
Luca Mesin
Luca Mesin, Massimo Valerio and Giorgio Capizzi
13:10 - 14:40
Lunch Break
14:40 - 15:00
Cancer Classification using improved Extreme Learning Machine
Swati Vipsita
Swati Vipsita, Ankita Shreya and Santos Kumar Baliarsingh
15:00 - 15:20
FF SVM: New FireFly based Gene Selection Algorithm for Microarray Cancer Classification
Hala Alshamlan
Nada Almugrm and Hala Alshamlan

15:30 - 23:00

8:40 - 13:10
Session 4
Sala Bracci
chair:
Peter Antal
8:40 - 9:40
Cristina Yenyxe Gonzalez Garcia
9:40 - 10:00
Biological Random Walks: integrating heterogeneous data in disease gene prioritization
Leonardo Martini
Luca Becchetti, Michele Gentili, Lorenzo Farina, Leonardo Martini and Manuela Petti
10:00 - 10:20
Genotype Combinations Linked to Phenotype Subgroups in Autism Spectrum Disorders
Tayo Obafemi-Ajayi
Zhao Junya, Thy Nguyen, Donald Adjeroh, Perry Koob, Jonathan Kopel and Tayo Obafemi-Ajayi
10:20 - 10:40
Non-negative Matrix Tri-Factorization for Data Integration and Network-based Drug Repositioning
Gaia Ceddia
Gaia Ceddia, Pietro Pinoli, Stefano Ceri and Marco Masseroli
10:40 - 11:00
A Multiobjective Approach to Classification in Drug Discovery
Michael Emmerich
Patrick Echtenbruck, Michael Emmerich and Boris Naujoks
11:00 - 11:30
Coffee Break
11:30 - 11:50
LErNet: characterization of lncRNAs via context-aware network expansion and enrichment analysis
Vincenzo Bonnici
Vincenzo Bonnici, Simone Caligola, Giulia Fiorini, Luca Giudice and Rosalba Giugno
11:50 - 12:10
Evaluating Pruning Methods in Gene Network Inference
Michael Saint-Antoine
Michael Saint-Antoine and Abhyudai Singh
12:10 - 12:30
Statistical Representation Models for Mutation Information within Genomic Data
Nuriye Özlem Özcan Şimşek
Nuriye Özlem Özcan Şimşek, Arzucan Özgür and Fikret Gürgen
12:30 - 12:50
Optimum Window Size and Overlapping for Efficient Seizure Prediction
Behrooz Abbaszadeh
Behrooz Abbaszadeh and M.C.E. Yagoub
12:50 - 13:10
Gene Mutation Analysis for Functional Annotations Using Graph Heuristics
Hisham Al-Mubaid

13:10 - 14:40
Lunch Break

14:40 - 15:00
Session 5
Sala Bracci
chairs:
Emanuele Domenico Giordano
Simone Furini
14:40 - 15:00
Data Science for Vaccines R&D
Duccio Medini

15:00 - 17:50
Session 5A
Sala Bracci
chair:
Emanuele Domenico Giordano
15:00 - 15:20
Information content analysis reveals desirable aspects of in vivo experiments of a synthetic circuit
David Gomez-Cabeza
David Gomez-Cabeza, Lucia Bandiera, Eva Balsa-Canto and Filippo Menolascina
15:20 - 15:40
ProCell: Investigating cell proliferation with Swarm Intelligence
Marco S. Nobile
Marco S. Nobile, Thalia Vlachou, Simone Spolaor, Paolo Cazzaniga, Giancarlo Mauri, Pier Giuseppe Pelicci and Daniela Besozzi
15:40 - 16:00
Automatic parameterization of the purine metabolism pathway through discrete event-based simulation
Simone Caligola
Simone Caligola, Tommaso Carlucci, Franco Fummi, Carlo Laudanna, Gabriela Constantin, Nicola Bombieri and Rosalba Giugno
16:00 - 16:20
In silico simulations reveal a causative link between increased glycolysis and metabolic reprogramming in autosomal dominant polycystic kidney disease
Roberto Pagliarini
Roberto Pagliarini and Alessandra Boletta
16:20 - 16:50
Coffee Break
16:50 - 17:10
Determining structural parameter identifiability in biological dynamical models by analysing the statistical properties of the likelihood behavior
Angela Re
Angela Re and Paola Lecca
17:10 - 17:30
Volumetric Representation of Biomolecules Using Cell Decomposition and Robotics
Mahendra Kumar Gohil
Arindam Chakraborty, Mahendra Kumar Gohil, Savitha Govardhan and Bhaskar Dasgupta
17:30 - 17:50
Structural Prediction of RNA Loops by Simulated Annealing
Mahendra Kumar Gohil
Mahendra Kumar Gohil, Arindam Chakraborty, Savitha Govardhan and Bhaskar Dasgupta
Session 5B
Sala Veranda
chair:
Simone Furini
15:00 - 15:20
A Probabilistic Programming Approach to Protein Structure Superposition
Lys Sanz Moreta
Lys Sanz Moreta, Ahmad Salim Al-Sibahi, Thomas Hamelryck, Douglas Theobald, Basile Nicolas Rommes, William Bullock and Andreas Manoukian
15:20 - 15:40
Predicting the Functions of Proteins from their Co-occurrences with Implicit and Explicit Functional Terms in Texts
Kamal Taha
15:40 - 16:00
Genetic Algorithm for Optimizing Global Alignment of Protein-Protein Interaction Network
Qanita Bani Baker
Qanita Bani Baker and Manar K Al-Bataineh
16:00 - 16:20
Predicting Protein-Protein Interactions based on Biological Information using Extreme Gradient Boosting
Paolo Valdez
Jerome Cary Beltran
Paolo Valdez, Jerome Cary Beltran and Prospero Naval Jr
16:20 - 16:50
Coffee Break
16:50 - 17:10
Interactions between Inter Partes Review and Hatch-Waxman Litigations
Feng-Chi Chen
Feng-Chi Chen, Pin-Shen Lee, Yun-Yu Huang, Huang-Chi Wu and Hsuan- Yu Lin
17:10 - 17:30
Constructing a Semantic Graph with Depression Symptoms Extracted from Twitter
Long Ma
Long Ma and Yan Wang
17:30 - 17:50
A Modified Particle Swarm Optimization Algorithm Used for Feature Selection of UCI Biomedical Data Sets
Talha Ali Khan
Talha Ali Khan, Khawaja Zain- Ul-Abideen and Steve Ling

18:00 - 18:15
Best Paper Award Announcement & Closing
Sala Bracci

18:15 - 20:00
Free Time

20:00 - 22:00
Dinner


download program (PDF version)

CIBCB2019_Proceedings_pwd